Harvard University
Appointed in 2003
Jackson Laboratory
Appointed in 2019
Glioma evolution in the presence of local immune activity
Diffuse glioma is the most common primary brain tumor in adults and is characterized by a poor prognosis and near universal recurrence following therapy. Given the poor response rate to the current standard-of-care, there is an active interest in applying immunotherapy to treat this disease. However, progress on this front has been limited, due in part to limited knowledge of how the immune system interacts with glioma to influence the tumor’s evolution. My work focuses on how cells of the immune system and accompanying microenvironment interact with malignant cells to influence the developmental trajectory of diffuse glioma. By integrating multi-omic bulk and single-cell datasets from pre- and post-treatment tumors, I aim to develop a better understanding of how gliomas evade the immune response and how the standard-of-care alters these processes. Results from this work can provide insights into how to shape disease progression and enable the sensitization of the gliomas to subsequent treatment approaches.
Massachusetts Institute of Technology
Appointed in 1971
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Massachusetts Institute of Technology
Appointed in 1971
Ribonucleic acid synthesis of vesicular stomatitus virus
Carnegie Institute for Science
Appointed in 1989
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Carnegie Institute for Science
Appointed in 1989
Thyroid hormone receptors in Xenopus metamorphosis
Harvard University
Appointed in 2023
Molecular basis of sensory integration in octopus
Cells detect and transform specific external stimuli into precise biochemical functions in a process termed signal transduction. Sensory systems are one example of signal transduction. Dr. Pablo Villar will investigate a unique sensory system: octopus chemotactile receptors that mediate contact-dependent aquatic chemosensation. Dr. Villar will use single-cell sequencing, cryo-EM, and physiology to investigate the molecular logic of receptor expression, complex formation, and physiological function in cephalopods. These experiments will be conducted in Dr. Nicholas Bellono’s lab at Harvard University. Villar’s studies will reveal general principles for the evolutionary fine tuning of signal transduction and help connect adaptations in protein structure with octopus behavior.
As a graduate student in Dr. Ricardo Araneda’s lab at the University of Maryland, Villar examined how neuromodulatory brain regions regulate circuits that process sensory information. Specifically, Dr. Villar showed that the basal forebrain activates shortly after the onset of a sensory stimuli, and in a stimulus-specific manner. With this experience in neuroscience and sensory stimuli, Villar will now examine the signal transduction of stimuli at a molecular level in cephalopods.
Stanford University
Appointed in 1976
Transformation by altered SV40 genomes
Salk Institute for Biological Studies
Appointed in 1976
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Salk Institute for Biological Studies
Appointed in 1976
Function and regulation of the proto-oncogene fos
Massachusetts Institute of Technology
Appointed in 2001
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Massachusetts Institute of Technology
Appointed in 2001
Calorie restriction and aging in C elegans
Harvard University
Appointed in 1989
Molecular response to inductive interactions in vertebrate embryos
Harvard University Medical School
Appointed in 2001
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Harvard University Medical School
Appointed in 2001
Elucidation of factors involved in ER network formation
University of Washington
Appointed in 2010
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University of Washington
Appointed in 2010
Exploring the connections between antiviral responses and autoimmunity
I am interested in how cells recognize and respond to viral pathogens through detection of viral nucleic acids. My research focuses on understanding innate immune pathways involved in cell intrinsic cytosolic DNA detection and coordination of an inducible antiviral response, and how dysregulation of these pathways leads to autoimmune disease.
I grew up on a California farm, surrounded by the natural world, with parents who continually nurtured my interest in it. This experience, coupled with having mentors who allowed me the freedom to follow my interests in their laboratories, have guided my development as a scientist. Freedom to direct my own research has been a tremendous gift, and I am fortunate to be in a truly collaborative research environment. By moving to Seattle I  became part of an outstanding research institute, and have also been able to pursue nonacademic interests. I have been on nationally-ranked college and club ultimate frisbee teams,  currently help coach the women’s ultimate frisbee team at the University of Washington, and compete as a competitive curler. My experiences have created many awesome friendships and helped me develop discipline, determination and leadership skills, while balancing my life as a research scientist.
Harvard University Medical School
Appointed in 2002
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Harvard University Medical School
Appointed in 2002
Mechanistic studies of epothilone biosynthesis
Columbia University
Appointed in 2008
Planar cell polarity protein activity and function in developing Drosophila epithelia
Harvard University
Appointed in 2013
Dissecting the molecular basis of mutually beneficial interactions between plants and bacteria
Many bacteria form complex multicellular communities known as biofilms. In these communities, cells are encased in a self-produced matrix that shield bacteria from diverse environmental stresses, antimicrobial agents, and host immune systems. Biofilms impact many arenas, including human health, ecology, and agriculture. Due to the importance and ubiquity of biofilms, there is increased interest in investigating the molecular mechanisms underlying the formation and maintenance of these communities. The soil bacterium Bacillus subtilis forms multicellular communities on the roots of some plants, including tomatoes, resulting in increased plant growth. My research examines how environmental signals are sensed by B. subtilis, initiating the biofilm program.
New York University
Appointed in 1962
Enzyme systems that synthesize nucleic acids
Duke University
Appointed in 1991
Cell cycle regualtion of cytoplasmic dynein
Harvard University Medical School /
MRC Center, University Medical School, England
Appointed in 1977
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Harvard University Medical School / MRC Center, University Medical School, England
Appointed in 1977
Membrane protein and peptides
Yale University
Appointed in 1950
Comparing the growth of tumors in such media to those transplanted in the anterior chamber
University of California, San Francisco
Appointed in 2021
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University of California, San Francisco
Appointed in 2021
Evolution of human-divergent neuronal activity-regulated genomic elements
New experiences elicit novel patterns of neural activity, prompting changes in gene expression that underlie learning. However, most studies of human brain evolution focus on species differences in baseline gene expression. Activity-dependent enhancers that control neuronal gene expression could represent an unexplored substrate for the evolution of human cognitive specializations. To examine the evolution of the activity-regulated genome in the human lineage, I will utilize primary neurons from human and macaque as well as induced pluripotent stem cell-derived neurons from human and chimpanzee to create cortical circuits in vitro and stimulate activity with physiological paradigms. I will measure coordinated changes in chromatin accessibility and gene expression in single cells to discover human-divergent neuronal activity-regulated elements (hDAREs). A CRISPRi screen will allow me to test hDARES to determine which are human-specific activity-dependent enhancers. To begin to investigate the consequences of evolutionary alterations for brain plasticity, I will model a human-specific deletion of a candidate activity-dependent enhancer regulating a gene with known roles in restricting spine growth in mice. Utilizing in vivo imaging to measure synapse formation during motor learning, I will test the hypothesis that activity-dependent expression of this gene, conserved between mice and chimpanzee, may inhibit learning-induced synapse formation and that the human-specific deletion may relieve this plasticity brake. Combining evolutionary genetics and systems neuroscience approaches will lay the groundwork for exploring this new dimension of human brain evolution.
Johns Hopkins University
Appointed in 1964
Protein biochemistry and structure
Rockefeller University
Appointed in 2015
Functional and mechanistic study of histone crotonylation in leukemias
My research interest is to understand the epigenetic mechanisms that drive cancer development. With a focus on a few newly discovered histone posttranslational modifications, I am currently studying their functional roles and mechanisms in cellular differentiation and oncogenesis._x000D_
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I spent my first 18 years in Hainan, a beautiful island located in the South China Sea before I moved to Beijing where I received B.S. degree in Biology from Tsinghua University. Initial exposure to scientific research at Tsinghua got me fascinated about science and promoted me to pursue graduate studies at Princeton University, where, in Dr. Yibin Kangs laboratory, I investigated the genetic causes underlying cancer initiation and metastasis. Appreciating that the interplay between genetic and epigenetic regulations is important in cancer development, I joined the laboratory of Dr. David Allis as a postdoc fellow where I continue studies in cancer research with a different focus on epigenetic causes of cancer. Outside of the lab, I enjoy the outdoors, spending time with family and friends, and trying delicious food.
Harvard University
Appointed in 2012
Chromatin imaging with STORM-FRET labels
My current research in Professor Xiaowei Zhuang’s lab at Harvard University focuses on the development and application of super-resolution light microscopy techniques to the study of chromatin organization. In particular, I am interested in the spatial organization of DNA in compact chromatin domains during the interphase.
My graduate research, co-advised by Professor Ned Wingreen and Professor Joshua Shaevitz at Princeton University, presented a series of discoveries regarding the physical properties, dynamics, and organization of the bacterial cytoskeleton and cell wall, including: 1) the mechanical contribution of bacterial cytoskeleton to cellular integrity; 2) the motion of bacterial cytoskeleton driven by cell wall synthesis; 3) the chiral organization and growth dynamics of cell wall in rod-shaped bacteria, derived from the spatial pattern of cytoskeleton; and 4) a possible mechanism for different cytoskeleton components to self-organize into distinct spatial patterns. My dissertation won the 2011 Award for Outstanding Doctoral Thesis Research in Biological Physics from American Physical Society.
University of California, San Francisco
Appointed in 2014
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University of California, San Francisco
Appointed in 2014
Mechanisms of mitotic spindle positioning by cortical dynein
During mitosis, the position of the spindle determines the size, the relative orientation and the developmental fate of daughter cells. The spindle is positioned by a pulling force generated by cortically localized dynein and exerted on astral microtubules that are connected to the spindle poles. Dynein is anchored to the cell cortex by the protein NuMA and activated to pull on the end of microtubule, the mechanism of which remains unknown. To investigate this, we will first systematically define and characterize the interaction between NuMA and dynein using purified components. Next we will reconstitute the microtubule end capturing and pulling force generation activities of dynein using a microfabricated barrier based system, in which the regulation of dynein by NuMA will be investigated. In addition, we will determine the crystal structure of the complex of NuMA-dynein binding regions to reveal the structural basis for their interactions. Finally, the overall structure of full-length NuMA will be examined using electron microscope and the functional significance of NuMA oligomerization will be determined. Together our proposed study will provide a mechanistic understanding of how dynein is recruited and activated by NuMA to generate cortical pulling force for mitotic spindle positioning.
Harvard University
Appointed in 2015
Imaging protein translation at the single-molecule level in living cells
Translation mediates the flow of genetic information encoded in mRNAs to proteins and can be regulated by many factors, contributing an essential part to the cellular gene expression regulation program. To understand how translation are influenced by various factors such as extracellular stimuli, cell metabolic states, subcellular localizations and so on, a method that could reveal the timing, location and level of translation activity on a defined single mRNA transcript in living cells would be invaluable. My research focuses on the development of a fluorescence imaging based method to study translation on a single mRNA transcript in living cells. I am going to use this method to study translation initiation and elongation under different conditions and at different subcellular compartments, such as neuronal dendrites and axons, to obtain previously unavailable information of translation dynamics.
Massachusetts Institute of Technology
Appointed in 2016
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Massachusetts Institute of Technology
Appointed in 2016
Probing the role of peptidoglycan in establishing bacterial cell polarity
University of California, San Diego
Appointed in 2009
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University of California, San Diego
Appointed in 2009
Characterization of new axon regeneration regulation pathways
Current research:  I am interested in dissecting the genetic basis of adult axon regeneration in the model organism C. elegans.
My first sixteen years were spent happily in a small town in southeastern China. I didn’t have much experience in biological sciences until I became an biology major at Tsinghua University. In a neuroscience course, a professor introduced to us the fantastic structure of neurons and the intriguing molecular mechanisms underlying how neurons encode external information and learn. From that moment, I was entranced by this field, and chose it as my career path. I came to Michael Ehlers’s lab at Duke University to study the molecular mechanisms of long term plasticity in hippocampal neurons. There, I discovered that an unconventional actin motor is a critical LTP-mediating player. Subsequently, I joined Yishi Jin’s lab as a postdoctoral researcher to explore the genetic mechanisms of adult axon regeneration in C. elegans. Outside the lab, I am a super soccer fan and love fresh-water fishing. My dreams are to watch a Derby game between FC Barcelona and Real Madrid at Camp Nou and to catch a 20-pound large-mouth bass.
Massachusetts Institute of Technology
Appointed in 1980
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Massachusetts Institute of Technology
Appointed in 1980
Characterzation of the A-MuLV transforming genotype
Stanford University
Appointed in 2025
Neural mechanism of behavioral exhaustion
Focusing on a task can often leave us exhausted despite low physical exertion. Dr. Yu Wang is investigating the source of this type of behavioral exhaustion. Building off her thesis research on neural sensing of peripheral metabolic states, she’s primed to make key insights into the brain’s metabolic deficiencies that may lead to our fatigue.
Wang developed her expertise in the neural integration of metabolic states during her Ph.D. research in Dr. Ardem Patapoutian’s and Dr. Li Ye’s labs at The Scripps Research Institute. Specifically, she was interested in how sensory neurons regulate peripheral metabolism, metabolic processes that occur in tissues and organs outside of the central nervous system, and how these neurons coordinate intracellular energy use to sustain activity. Wang demonstrated that somatosensory neurons enervate adipose tissue and modulate adipocyte function by acting as a break on the sympathetic system. Interestingly, she found that the mechanoreceptor PIEZO2 is highly expressed in these neurons, and is required for their brake-like function. Collectively, her research has provided keen insight into the interplay between neural function and peripheral metabolic states.
As a postdoc in Dr. Karl Deisseroth’s lab at Stanford University, Wang will examine the neural mechanisms of behavioral exhaustion. She hypothesizes that repetitive behaviors deplete local energy resources in specific brain regions, ultimately leading to behavioral exhaustion. Wang will combine different mouse models with repetitive behaviors, and assess metabolic and energetic states using metabolomics and imaging. Wang’s studies will provide novel insight into behavioral fatigue, and may inform on better intervention strategies.
University of California, San Francisco
Appointed in 1985
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University of California, San Francisco
Appointed in 1985
Mechanism of action of maturation promoting factor
University of Glasgow, Scotland
Appointed in 1961
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University of Glasgow, Scotland
Appointed in 1961
Biosynthesis of adrenocortical sterioids
Max-Planck Institute
Appointed in 1969
Gene order and translational reguation of the phage M12
Massachusetts Institute of Technology
Appointed in 1964
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Massachusetts Institute of Technology
Appointed in 1964
Intracellular metabolic control
Duke University
Appointed in 2002
Structural Biology of human mismatch repair
University of North Carolina, Chapel Hill
Appointed in 1997
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University of North Carolina, Chapel Hill
Appointed in 1997
Interactions of microtubules and actin in cell motility
Brandeis University
Appointed in 2022
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Brandeis University
Appointed in 2022
Timing molecular interactions in high throughput via a polymerase stopwatch
Deep learning methods have revolutionized structural biology by accurately predicting single structures of proteins and protein-protein complexes. However, biological function is rooted in a protein’s ability to sample different conformational substates, and disease-causing point mutations are often due to population changes of these substates. This has sparked immense interest in expanding the capability of algorithms such as AlphaFold2 (AF2) to predict conformational substates. We demonstrate that clustering an input multiple sequence alignment (MSA) by sequence similarity enables AF2 to sample alternate states of known metamorphic proteins, including the circadian rhythm protein KaiB, the transcription factor RfaH, and the spindle checkpoint protein Mad2, and score these states with high confidence. Moreover, we use AF2 to identify a minimal set of two point mutations predicted to switch KaiB between its two states. Finally, we used our clustering method, AF-cluster, to screen for alternate states in protein families without known fold-switching, and identified a putative alternate state for the oxidoreductase DsbE. Similarly to KaiB, DsbE is predicted to switch between a thioredoxin-like fold and a novel fold. This prediction is the subject of ongoing experimental testing. Further development of such bioinformatic methods in tandem with experiments will likely have profound impact on predicting protein energy landscapes, essential for shedding light into biological function.
Cincinnati Children's Hospital
Appointed in 2025
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Cincinnati Children's Hospital
Appointed in 2025
Multifunctional RNA-binding transcription factors coordinate cell states in development
Human development at the earliest stages is a complicated process with many intrinsic and extrinsic cell signals. For her fellowship, Dr. Bailey Weatherbee will investigate the molecular mechanisms of lineage-defining transcription factors that enable early embryonic development.
During her Ph.D. research in Dr. Magdalena Zernicka-Goetz’s lab at the University of Cambridge, Weatherbee developed a cellular model of the human post-implantation embryo. By combining various types of stem cells made by turning on certain genes, she created cell clusters that mimic important stages of early embryo development. Furthermore, Weatherbee used cell models and embryos to investigate the requirement of specific signaling pathways for different cell types in early development. These studies are a major step forward in modeling the earliest steps in embryonic development and will enable numerous follow-up studies by the broader scientific community.
Now, in Dr. Aaron Zorn’s lab at Cincinnati Children’s Hospital, Weatherbee will investigate the molecular mechanisms of two critical lineage-defining transcription factors (TFs). She hypothesizes that in addition to their canonical DNA-binding activities, binding to RNA is also crucial for their function. Weatherbee will use cell and animal models to evaluate the developmental significance of TF-RNA interactions and identify partner proteins that mediate their function. Since mutations that impact RNA regulation occur in several congenital diseases and cancers, Weatherbee anticipates that her findings will inform on novel therapeutic strategies to treat these conditions.
University of Edinburgh, Scotland
Appointed in 1994
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University of Edinburgh, Scotland
Appointed in 1994
Analysis of apoptosis using a cell-free assay
Harvard University Medical School
Appointed in 1976
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Harvard University Medical School
Appointed in 1976
Glial factor controlling neruoblasts differentiation
Massachusetts Institute of Technology
Appointed in 1978
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Massachusetts Institute of Technology
Appointed in 1978
DNA Replication
University of California, Berkeley
Appointed in 2014
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University of California, Berkeley
Appointed in 2014
RNA, ribosome and RNA polymerase: three molecules at a time
Transcription by RNA Polymerase and translation by the Ribosome are two fundamental and important processes that shape cellular identity. Mutations that disrupt these processes can result in disease such as cancer. We strive to understand the underlying mechanisms of transcription and translation using optical tweezer. This single molecule technique allows us to monitor the actions of individual RNA Polymerase and the ribosome in real time that are often scored as averages in bulk measurements. We currently aim to scrutinize the activities of these molecular motors when coupled in the same reaction. The coupling between RNAP polymerase and the ribosome, which occurs in vivo in E. coli., constitutes an additional layer to control gene expression. A deeper understanding of both transcription and translation either alone or coupled will open up new ideas to curb or to cure diseases that stem from a malfunction in these process.
University of Colorado, Boulder
Appointed in 1992
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University of Colorado, Boulder
Appointed in 1992
Mechanisms of protein facilitated RNA catalysis
University of Texas Southwestern Medical Center
Appointed in 2018
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University of Texas Southwestern Medical Center
Appointed in 2018
Bleb-nucleated signaling scaffolds in metastasis-prone melanoma cells
University of California, Davis
Appointed in 1969
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University of California, Davis
Appointed in 1969
Structure and assembly of bacterial ribosomes
Massachusetts Institute of Technology
Appointed in 2012
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Massachusetts Institute of Technology
Appointed in 2012
Aneuploidy effect on protein homeostasis
Salk Institute for Biological Studies
Appointed in 1966
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Salk Institute for Biological Studies
Appointed in 1966
Genetic mechansims that control the production and specificity of antibodies
University of Washington, Seattle
Appointed in 1985
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University of Washington, Seattle
Appointed in 1985
Molecular analysis of cdc15 in chromosome segregation
Harvard University Medical School
Appointed in 2020
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Harvard University Medical School
Appointed in 2020
Unified model of social processing in prefrontal cortex
I study the deep statistical structure of behavior to learn how it is shaped by ongoing brain activity. The purpose of the central nervous system is to coordinate an animal’s actions in space and time. The power of mammalian brains is evident in the variety and expressiveness of their behavior, yet it is precisely these qualities that make the behavior difficult to annotate and record – steps that are prerequisite for modern data analysis. As a consequence, neuroscience has mostly been limited to a narrow set of behaviors and well-defined tasks. This limitation is especially severe for the study of social behavior, in which the spontaneous actions and reactions of two interacting animals created an added level of complexity.
Recently, the advent of new tools in machine learning have made it possible to quantify behavior with much greater precision and richness. My research focuses on creating new tools for behavior measurement and applying them to rodent social behavior, with the specific goal of understanding how social interaction is shaped by the prefrontal cortex.
Stanford University
Appointed in 1977
In vitro replication of col E1 DNA
University of California, San Francisco
Appointed in 1984
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University of California, San Francisco
Appointed in 1984
Effect of protein synthesis inhibition on transcript localization
University of California, Berkeley
Appointed in 1984
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University of California, Berkeley
Appointed in 1984
Adaptiation of E. Coli and S. typhimurium to chemostatic stimuli
Brandeis University
Appointed in 1974
Structure of fibrinogen