Directory - Jane Coffin Childs Memorial Fund

Status

Year Appointed

Institution

Name

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Deborah Hogan Jane Coffin Childs Fellow

Harvard University Medical School

Appointed in 2000

Interactions with dual species biofilms

Peter J. Hollenbeck Jane Coffin Childs Fellow

King's College, London

Appointed in 1984

A novel microtubule-associated protein causes TP-sensitive aggregation of microtubules

Gunther Hollopeter Jane Coffin Childs - HHMI Fellow

University of Utah

Appointed in 2007

Is PIP2 required for synaptic vesicle exocytosis or endocytosis?

Caroline Holmes, Ph.D. Jane Coffin Childs Fellow

Harvard University

Appointed in 2024

Learning structure in genotype to phenotype maps

Inferring the genetic basis of quantitative traits is foundational to understanding the biological mechanisms that underlie complex phenotypes such as behavior, homeostasis, and disease. Mapping genotype to phenotype has been transformational for understanding and treating diseases controlled by a single gene, or monogenic. However, understanding complex, highly polygenic phenotypes with currently available approaches can take decades of research from fields of researchers to make progress, if the problem is even solvable with current methodologies.

Dr. Caroline Holmes will transform the process of unraveling polygenic phenotypes in Dr. Michael Desai’s lab at Harvard University. Dr. Holmes will develop new computational approaches and use high-throughput experiments to learn the structure of interactions between genes involved in a particular phenotype. Holmes then will test her predictions of interactions with mutational perturbations. Ultimately, Holmes will develop methods to improve the generalizability of genotype to phenotype maps and test their accuracy on a distinct microbe that was not used to train the system. If successful, Holmes’ methods would rapidly catalyze the process of understanding and rationally perturbing polygenic phenotypes.

Holmes’ longstanding interest in both biology and physics dates back to her studies and research as an undergraduate student at Emory University. Her graduate studies emphasized the physics side as Holmes mainly used theoretical approaches in the labs of Dr. Bialek and Dr. Palmer at Princeton University. However, many of Holmes’ research applications were still biological in nature. For example, Holmes demonstrated that non-24 hour circadian periods can compensate for systematic error that arises as a result of seasonality. Holmes will now develop quantitative experimental systems during her postdoctoral research and combine this with her expertise in theoretical approaches to make inroads into complex polygenic phenotypes.

Leslie J. Holsinger Jane Coffin Childs Fellow

Stanford University

Appointed in 1994

Dissecting converging signalling pathways in T cell activation

Timothy E. Holy Jane Coffin Childs Fellow

Harvard University

Appointed in 1998

Neural mechanisms of mammalian pheromone recognition

Erik Hom Jane Coffin Childs Fellow

Harvard University

Appointed in 2007

Experimental evolution of symbiosis

Robert W. Honess Jane Coffin Childs Fellow

University of Chicago

Appointed in 1972

Nancy Hopkins Jane Coffin Childs Fund

Harvard University and Cold Spring Harbor Laboratory /
Cold Spring Harbor Laboratory

Appointed in 1971

Life cycle of tumor virus SV40

Sally A. Horne-Badovinac Jane Coffin Childs Fellow

University of California, Berkeley

Appointed in 2003

Epithelial migration in the drosophila egg chamber

Patricia Horvath, Ph.D. Jane Coffin Childs - HHMI Fellow

Harvard University

Appointed in 2022

Dissecting the neuronal logic of behavioral hierarchy

Animals rely on instinctive behaviors and homeostatic responses, such as parenting, feeding, mating, and sleeping, to ensure individual and species survival. Maximizing survival requires meeting the most pressing needs at the right time, forcing animals to establish behavioral priorities based on a hierarchy of needs. Neurons controlling many of these behaviors are located within the highly interconnected medial preoptic area of the hypothalamus (MPA), making this structure a likely control hub underlying behavioral hierarchy. However, the neural logic of intra-MPA connectivity and how this directs behavioral priorities across physiological states is unknown.

Using the mouse MPA as a model system, I am studying the cell type-specific structural and functional connectivity underlying key competing behavioral and physiological responses. Further, I am determining how animal states, such as virgin or parent, alter neuron function to induce new behavioral priorities. This work will provide the first depiction of a neural basis of the hierarchy of needs and open new avenues for understanding the neural basis of behavior.

Andrew A. Horwitz Jane Coffin Childs Fellow

University of California, San Francisco

Appointed in 2007

Synthetic chromatin: exploring the design principles

Aaron Hosios Jane Coffin Childs Fellow

Harvard University School of Public Health

Appointed in 2018

Role of the P13K-mTOR signaling network in reprogramming lipid metabolism

To proliferate, cancer cells activate diverse biosynthetic pathways, and determining the critical metabolic pathways will allow new therapies to be developed. Recent studies of cancer metabolism have examined pathways to generate amino acids, nucleotides, and lipids. Studies of lipid metabolism have been largely confined to understanding how cells generate the precursors for de novo lipid synthesis; however, how cells determine the fates of these lipids and how these pathways contribute to proliferation remain undefined. I propose to study the regulation of lipid metabolism downstream of proliferative signaling via the PI3K-mTORC1 network. mTORC1 is a master regulator of cellular metabolism that promotes key anabolic processes, including fatty acid synthesis. My preliminary data suggest that this kinase also regulates the fate of specific lipid pools, favoring synthesis of phospholipids over triglycerides. My proposed studies will define the mechanism and consequences of this regulation. Activating lipid synthesis allows cells to couple membrane expansion to other biosynthetic processes, and I will determine whether the programmed changes in lipid metabolism represent a vulnerability of cells with oncogenic activation of mTORC1. Collectively this study will advance current knowledge of how oncogenic signaling influences cancer metabolism and will define how lipid metabolism contributes to cancer cell proliferation.

Amer Azim Hossain, Ph.D. Jane Coffin Childs Fellow

Memorial Sloan Kettering Cancer Center

Appointed in 2024

Mechanisms and consequences of APOBEC3 targeting of extrachromosomal DNA

Extrachromosomal DNAs (ecDNAs) are circular DNA elements that amplify oncogenes and mediate chemotherapy resistance. Despite their importance in cancer, currently no therapies directly target these aberrant molecular structures.

Dr. Amer Hossain will investigate innate immune system recognition of ecDNAs to limit their oncogenic potential in Dr. John Maciejowski’s lab at Memorial Sloan Kettering Cancer Center. Dr. Hossain’s research will provide a fundamental understanding of the recognition and processing of ecDNAs by the immune system. Furthermore, his studies may provide insight into defects in this process that lead to cancer, and into therapeutic strategies to reinforce immune clearance of ecDNAs.

Hossain studied bacteria-phage conflicts as a graduate student in Dr. Luciano Marraffini’s lab at The Rockefeller University. Specifically, he developed a novel functional assay to screen for antiphage defense elements, and discovered a DNA glycosylase that inhibits phage replication. At first glance, this might seem like a distant subject from cancer biology. Yet, Hossain notes in many ways the immune-ecDNA conflict mirrors the host-pathogen conflict in that they both involve recognition and degradation of DNA substrates. Therefore, Hossain will apply his expertise to cancer biology during his postdoctoral research.

Hristo Houbaviy Jane Coffin Childs Fellow

Massachusetts Institute of Technology

Appointed in 2000

Biochemical studies of Xist-mediated gene silencing

Fariba Houman Jane Coffin Childs Fellow

Harvard University

Appointed in 1991

Role of CDC14 and a related check point in mitosis

David E. Housman Jane Coffin Childs Fellow

Massachusetts Institute of Technology

Appointed in 1971

DNA synthesis in HeLa cells

Susan C. Howard Jane Coffin Childs Fellow

Johns Hopkins University

Appointed in 1980

Control of ASN-linked oligosaccharide processing

Melissa Hoyer Jane Coffin Childs Fellow

Harvard University Medical School

Appointed in 2019

Spatial and temporal organelle quality control during changes in cell state

I have always been fascinated by the individual machines of the cell called organelles. In undergrad, I tagged yeast cells with a fluorescent mitochondria reporter. When I looked under the microscope, I was fully hooked. The microscopic world inside the cell was much more elaborate that I could have ever imagined. Subsequently, I decided to continue on to graduate school and study the endoplasmic reticulum (ER) in mammalian cultured cells. The ER is often pictured as this static platform for protein synthesis, but using live cell fluorescence microscopy, you can see how the ER dynamically rearranges its structure: tubules grow out or retract, sheets shrink or expand. This drives a constant remodeling process. For my PhD thesis, I focused on why and how the ER remodels its structure to contact other organelles.

In my current work, I now get to study organelles in neurons. A specialized cell like a neuron maintains a certain shape and structure to properly function. Cells can clear away damaged organelles through the ‚Äúself eating‚Äù process of autophagy. Interestingly, prior evidence indicates that autophagy machinery is needed for human embryonic stem cell differentiation to different cell states. However, to date, there is no established systematic map of organelle-phagy for stem cell conversion to a neuron. Additionally, in human patients with neurodegenerative diseases, including Parkinson‚Äôs disease, many identified gene variants are in autophagy-regulating genes. In my work, I genetically edit and tag stem cells using CRISPR and then convert these cells to neurons. With these engineered induced neurons, I study organelle structure, dynamics, and turnover in order to reveal the underlying mechanisms sustaining the architecture required for healthy and efficient neuronal function.

Christine A. Hrycyna Jane Coffin Childs Fellow

National Cancer Institute

Appointed in 1994

Functional expression and mutational analysis of human P-glycoprotein

Yanyan Hu, Ph.D. Jane Coffin Childs - HHMI Fellow

Dana-Farber Cancer Institute & Harvard Medical School

Appointed in 2024

Unveiling Novel Therapeutic Targets in Cancer Through Cell-Surface Proteomic Profiling

Dr. Yanyan Hu’s research focuses on discovering new biomarkers to help diagnose, monitor, and treat cancer. In particular, Dr. Hu hypothesizes that studying the tumor cell surface proteome will reveal an abundance of potential therapeutic and diagnostic targets against cancer.

In Dr. William Kaelin, Jr.’s lab at Dana-Farber Cancer Institute, Hu has devised a proximity labeling method that enables the direct quantification of proteins on the surface of cancer cells. Hu will now use this method to examine two types of cancer: clear cell renal cell carcinoma, and tumors with homologous recombination defects. In addition to revealing novel and fundamental information on cancer cell surface proteomes, Hu’s research has direct implications for future diagnostic and therapeutic approaches.

Hu’s Ph.D. research in Dr. Sheng Ding’s lab at Tsinghua University focused on totipotent stem cell biology. Totipotent stem cells are capable of producing every kind of differentiated cell in both embryonic and extraembryonic tissues. Previously, they had only been generated through IVF or SCNT using germline cells. Hu discovered a cocktail of three small molecules that converted mouse pluripotent stem cells into totipotent stem cells. Now Hu will apply her expertise of stem cell biology to explore similar mechanisms – such as cellular plasticity, self-renewal, and differentiation – to cancer biology during her postdoctoral research.

Changkun Hu, Ph.D. Jane Coffin Childs - HHMI Fellow

Fred Hutchinson Cancer Center

Appointed in 2023

Elucidate the dynamics of kinetochore assembly by single-molecule imaging

Aneuploidy is a hallmark of cancer development and occurs due to defects in chromosome segregation. The kinetochore, a complex consisting of over 100 different types of proteins, is required for the proper segregation of chromosomes. However, we lack an in depth understanding of the step-by-step assembly process resulting in a functional kinetochore due to the extreme molecular and temporal complexity of this complex. Dr. Changkun Hu will reconstitute kinetochore assembly in vitro and use TIRF microscopy to measure individual kinetochore protein recruitment times in Dr. Sue Biggins’ lab at the Fred Hutch. This approach will allow Dr. Hu to determine rate-limiting steps and key regulating mechanisms in kinetochore assembly and will serve as a blueprint for future studies examining the assembly of other large complexes. Furthermore, this work may reveal novel trouble points in chromosome segregation that lead to aneuploidy in cancer.

As a PhD student in Dr. Nicholas Wallace’s lab at Kansas State University, Dr. Hu’s research focused on the repair of DNA double-strand breaks (DSBs). Dr. Hu demonstrated that beta human papillomavirus type 8 protein E6 (8E6), long known to impair traditional DNA-repair pathways, also promotes DNA repair via a mutagenic DSB repair pathway termed alternative end joining. In this way, 8E6 promotes cancer development by increasing genomic instability. Dr. Hu will now pivot to study genome stability at the chromosome level in Dr. Biggins’ lab.

Jian Hua Jane Coffin Childs Fellow

Whitehead Institute for Biomedical Research

Appointed in 1998

Analysis of cell expansion regulation in Arabidopsis

Wei Hua Jane Coffin Childs Fellow

Yale University School of Medicine

Appointed in 2003

Mechanism of cell polarity in the sorting pathway

Enoch S. Huang Jane Coffin Childs Fellow

Washington University in St. Louis

Appointed in 1997

Closing the gap: Near-native folds to all-atom models

Wei-Hsiang Huang Jane Coffin Childs - HHMI Fellow

Stanford University

Appointed in 2014

Spatiotemporal dissection of BDNF-TrkB in circuit assembly

Bessie P-H. Huang Gilula Jane Coffin Childs Fellow

Rockefeller University

Appointed in 1972

Isolation and characterization of conditions mutations affecting cellular neurotubules

Alex Hughes Jane Coffin Childs - Merck Fellow

University of California, San Francisco

Appointed in 2015

Within and between-cell effects of driver mutations on breast tumor fitness

I am applying quantitative engineering approaches to study collective cell phenomena in cancer. Different cells in tumors develop different sets of mutations over time, creating a range of cell clones. One view of the role of cancer mutations is that they enable a small number of progressively malignant clones to take over the tumor one after another. However, mutations can have more complicated effects on tumor progression because their outward effects on the growth of a clone can depend on who their neighbors are. Therefore, I want to understand how cancer mutations affect the overall fitness of tumors by directly measuring it, not just in the cells that contain mutations, but also in neighboring cells. My research aims to shed light on how benign tumors make the transition to proliferative, invasive tumors; perhaps uncovering an Achilles heel to the manipulation of normal cells by mutant ones, leading to new types of cancer therapies.

Jun R. Huh Jane Coffin Childs Fellow

New York University

Appointed in 2006

Studying the epigenetic nature of CD4 silencing in fully committed cytotoxic T cells

David W.L. Hukins Jane Coffin Childs Fellow

Purdue University

Appointed in 1972

Structures and interactions of intercellular polysaccharides

Eric H. Humphries Jane Coffin Childs Fellow

Imperial Cancer Research Fund Laboratories, England

Appointed in 1974

Genetic structure of RNA tumor viruses

Ruei-Jiun Hung Jane Coffin Childs Fellow

Harvard University Medical School

Appointed in 2013

The role of organ communications in stem cell aging

James R. Hunsley Jane Coffin Childs Fellow

Harvard University

Appointed in 1970

Translational control of cocoonase biosynthesis

John F. Hunt Jane Coffin Childs Fellow

University of Texas Southwestern Medical Center

Appointed in 1992

Novel membrane protein crystallization reagents

M. Melissa Hunter-Ensor Jane Coffin Childs Fellow

Massachusetts Institute of Technology

Appointed in 1998

Genetic analysis of neuromodulators in nematode

Robert A. Hyman Jane Coffin Childs Fellow

Salk Institute for Biological Studies

Appointed in 1970

Tumor antigens in murine myeloma cells

Maurizio Iaccarino Jane Coffin Childs Fellow

Stanford University

Appointed in 1966

Enzymology of nucleic acid metabolism

Kostas Iatrou Jane Coffin Childs Fellow

Harvard University

Appointed in 1978

Chorion gene organization and expression in the Silkmoth Bombyx mari

James A. Imlay Jane Coffin Childs Fellow

Duke University

Appointed in 1987

Suproxide production by respiring membranes of E. coli

Jorge A. Iniguez-Lluhi Jane Coffin Childs Fellow

University of California, San Francisco

Appointed in 1994

Functional analysis of oncogene/steroid receptor

Sarah Innes-Gold, Ph.D. Jane Coffin Childs - Merck Fellow

Harvard University

Appointed in 2021

Microscopic measurements of membrabe tension in motile cells

Cancer metastasis and immune cell migration require motile movement, meaning the cell membrane must slip relative to the cytoskeleton. Thus, membrane-cytoskeleton attachments in motile cells likely rearrange, allowing tension to propagate across the membrane. In the current literature, there are ~106-fold discrepancies in reported timescales of membrane tension propagation. I hypothesize these discrepancies reflect variability between cell types, arising from differences in membrane microstructure. I specifically hypothesize that in motile cells, transmembrane proteins are arranged to allow membrane flow, enabling rapid tension equilibration, while non-motile cell membranes are structured to impede tension propagation.

I will directly measure tension propagation timescales in motile and non-motile cells and simultaneously characterize the arrangement of cytoskeleton-anchored transmembrane proteins. I will use optical tweezers to stretch membrane tethers, perturbing and measuring tension. I will visualize immobile transmembrane proteins with targeted photochemical labeling and high-resolution fluorescence imaging, revealing how transmembrane protein arrangement regulates membrane fluidity, and how cancer cells might exploit this to metastasize